Description
Due to a problem in the Intel® Quartus® Prime Pro Edition software, you may see this warning message when INIT_DONE signal is enabled on SDM_IO pin which also has MSEL0 pin assigned to it. This warning message can be ignored. INIT_DONE, MSEL pins are implemented correctly in the design.
Resolution
This problem is scheduled to be fixed in future Intel Quartus Prime Pro Edition software version.