The Stratix® IV GX device Pin-Out files have a pin number coulmn labeled F1152 and F1152 (With PMA Transceiver).
You can identify which column of the Pin-Out File to use for the Stratix IV GX device when in the F1152 package by reviewing the ordering code.
If the 10th character of the ordering code shows a -D or -F you will use the column labeled F1152.
If the 10th character of the ordering code shows a -H, -K or -N then you will use the column labeled F1152 (With PMA Transceiver).
For complete details on the Stratix IV GX ordering code format you can refer to the Stratix IV GX Device Handbook Volume 1 (PDF).